(Nocardia rubra)
5’-T C G C G A-3’
3’-A G C G C T-5’
Reaction Temperature: 37°C
Prototype: NruI
Inactivation Temperature (20 min): 65°C
Reaction Buffer:
1x High Buffer: 50 mM Tris-HCl (pH 7.5 at 37°C), 10 mM MgCl2, 1 mM dithiothreitol, 100 mM NaCl, 100 µg/ml bovine serum albumin.
Unit Definition: One unit is the amount of enzyme required to completely digest 1 µg of unmethylated lambda DNA in 1 hr in a total reaction volume of 50 µl.
Assay Conditions: 50 mM Tris-HCl (pH 7.5 at 37°C), 100 mM NaCl, 10 mM MgCl2, 1mM dithiothreitol, 1 µg of unmethylated lambda DNA and 100µg/ml bovine serum albumin. Incubation is at 37°C for 1 hr in a reaction volume of 50 µl.
Storage Buffer: 20 mM Tris-HCl (pH 7.5 at 22°C), 100 mM KCl, 0.1 mM EDTA, 1 mM dithiothreitol, 100 µg/ml bovine serum albumin and 50% (v/v) glycerol.
Storage Conditions: Store at –20°C.
Quality Control:
Non-specific Endonucleases: Incubation of 10 units of NruI with 1 µg of unmethylated lambda DNA at 37°C for 16 hrs (a 160-fold over-digestion) resulted in the same sharp characteristic banding pattern as the standard assay reaction, as determined by agarose gel electrophoresis.
3’-Exonuclease: 5.5, 11 and 22 units of NruI and 0.15 µg (1.15 pmol of 3’-ends) of lambda/TaqI fragments (3’-labeled with T4 DNA Polymerase and [³H]dGTP and [³H]dCTP), incubated for 1hr at 37°C resulted in 0.30-slope of %-end label released per unit of enzyme. Reaction volume 10 µl.
5’-Exonuclease/5’-Phosphatase: Incubation of 5.5, 11 and 22 units of NruI with 0.15 µg (1.38 pmol of 5’-ends) of [5’-³²P] lambda/HaeIII fragments for 1 hr at 37°C resulted in 0.30-slope of %-end label released per unit of enzyme. Reaction volume 10 µl.